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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
24
total RNA-seq
13
ChIP-seq
10
MeRIP-seq
2
Hi-C
1
DNase-seq
Assay category
35
DNA accessibility
24
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
6
broad histone mark
5
nucleotide modification
4
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
65
bam
43
bigWig
39
bed narrowPeak
24
tsv
7
fastq
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
84
Homo sapiens
Biosample type
44
tissue
22
cell line
13
primary cell
5
in vitro differentiated cells
Organ
72
pancreas
29
epithelium
7
connective tissue
1
adipose tissue
Project
77
AMP
7
HPAP
Genome assembly (visualization)
70
GRCh38
65
hg19
Lab
67
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Klaus Kaestner, Upenn
Audit category:
28
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
84 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
MeRIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
6
1
primary cell
osteoblast
1
4
1
pancreatic alpha cell
5
pancreatic beta cell
2
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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