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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
7
ATAC-seq
5
total RNA-seq
Assay category
27
DNA binding
7
DNA accessibility
5
Transcription
Target of assay
14
transcription factor
13
histone
13
histone modification
10
broad histone mark
6
RNA binding protein
chromatin remodeller
6
control
3
narrow histone mark
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
26
December, 2018
25
February, 2020
22
October, 2017
19
April, 2020
17
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
33
fastq
31
bam
27
bigWig
20
bed narrowPeak
15
bigBed narrowPeak
14
tagAlign
5
tsv
4
bed broadPeak
Organism
39
Homo sapiens
Biosample type
22
tissue
17
cell line
Organ
16
brain
12
blood
12
bodily fluid
spleen
5
liver
5
pancreas
1
adipose tissue
1
connective tissue
Project
39
AMP
Genome assembly (visualization)
27
GRCh38
26
hg19
Lab
38
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
organ_slims!
spleen
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
39 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
cell line
GM12878
12
HepG2
5
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