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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
64
ChIP-seq
46
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
8
DNase-seq
1
FAIRE-seq
Assay category
108
DNA accessibility
64
DNA binding
61
Transcription
46
DNA methylation
Target of assay
61
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
107
bed narrowPeak
103
fastq
102
bam
94
bigWig
69
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
txt
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
279
Homo sapiens
Biosample type
135
primary cell
83
tissue
61
cell line
Organ
111
pancreas
93
liver
80
epithelium
15
blood
15
bodily fluid
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
145
AMP
134
HPAP
Genome assembly (visualization)
106
hg19
73
GRCh38
Lab
134
Klaus Kaestner, Upenn
81
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
spleen
BIOSAMPLE
ASSAY
279 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
20
2
islet of Langerhans
18
6
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
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