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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
813
ChIP-seq
576
total RNA-seq
253
ATAC-seq
180
single cell RNA-seq
175
DNase-seq
86
RNA microarray
28
snATAC-seq
23
pCHi-C
19
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
813
DNA binding
770
Transcription
460
DNA accessibility
30
DNA methylation
16
3D chromatin structure
Target of assay
589
histone modification
588
histone
309
narrow histone mark
279
broad histone mark
155
control
71
transcription factor
23
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
23
February, 2020
21
October, 2017
19
April, 2020
16
November, 2018
14
May, 2023
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1385
bam
1275
bigWig
957
bed narrowPeak
618
tsv
538
bigBed narrowPeak
310
fastq
230
tagAlign
209
bed broadPeak
198
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2197
Homo sapiens
Biosample type
2205
tissue
1049
primary cell
662
cell line
295
in vitro differentiated cells
9
stem cell
Organ
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2108
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1363
GRCh38
1259
hg19
Lab
1853
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
spleen
connective tissue
files.file_type!
ibed
BIOSAMPLE
ASSAY
2205 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
68
6
1
7
4
3
1
1
4
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
1
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