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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
133
ChIP-seq
7
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
399
Transcription
133
DNA binding
9
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
10
July, 2019
2
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
500
bam
478
bigWig
399
tsv
104
fastq
67
bed narrowPeak
64
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
549
Homo sapiens
Biosample type
488
tissue
61
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
550
AMP
Genome assembly (visualization)
479
hg19
476
GRCh38
Lab
550
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
spleen
biosample_type!
primary cell
BIOSAMPLE
ASSAY
550 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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cell line
GM12878
60
1
in vitro differentiated cells
white fat cell
1
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