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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
28
DNase-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
123
DNA binding
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
57
April, 2019
40
May, 2024
33
June, 2019
16
May, 2019
13
July, 2019
6
October, 2019
5
March, 2020
Available data
144
bigWig
138
bed narrowPeak
119
bam
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
Organism
170
Homo sapiens
Biosample type
161
tissue
9
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
203
connective tissue
169
vasculature
blood vessel
115
limb
97
bone element
90
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
170
AMP
Genome assembly (visualization)
143
GRCh38
100
hg19
Lab
130
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
spleen
blood vessel
assay_slims!
Transcription
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
tissue
heart left ventricle
35
3
4
2
1
1
1
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
right atrium auricular region
10
2
1
+ See 1 more…
primary cell
cardiac fibroblast
5
3
1
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