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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
58
single cell RNA-seq
49
total RNA-seq
40
ChIP-seq
6
snATAC-seq
2
STARR-seq
1
Hi-C
Assay category
107
Transcription
81
DNA accessibility
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
130
August, 2021
47
September, 2023
40
May, 2024
14
May, 2023
Available data
104
bed narrowPeak
64
xls
57
txt
40
bigWig
1
hic
Organism
231
Homo sapiens
Biosample type
229
tissue
2
cell line
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
184
AMP
47
KPMP
Genome assembly (visualization)
115
GRCh38
1
hg19
Lab
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
organ_slims!
spleen
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
231 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
tissue
kidney
75
58
49
6
1
left cardiac atrium
40
cell line
HEK293T
2
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