Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
111
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
64
February, 2021
47
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
22
July, 2019
15
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
215
bigWig
185
bed narrowPeak
182
bam
165
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
Organism
363
Homo sapiens
Biosample type
297
tissue
64
cell line
2
primary cell
Organ
893
pancreas
683
liver
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
363
AMP
Genome assembly (visualization)
257
GRCh38
179
hg19
Lab
323
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
organ_slims!
spleen
connective tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
363 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
3
1
36
2
heart
12
1
4
18
1
1
1
heart right ventricle
11
17
1
1
2
1
1
+ See 10 more…
cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download