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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
total RNA-seq
194
ChIP-seq
74
single cell RNA-seq
65
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
372
Transcription
194
DNA binding
75
DNA accessibility
4
DNA methylation
Target of assay
135
histone
135
histone modification
70
broad histone mark
65
narrow histone mark
41
control
18
transcription factor
9
RNA binding protein
Date released
168
August, 2017
153
July, 2018
72
September, 2018
53
November, 2019
53
October, 2018
May, 2021
39
April, 2018
26
February, 2021
24
May, 2022
14
October, 2019
11
September, 2017
7
November, 2018
6
March, 2020
4
July, 2019
4
June, 2019
4
October, 2017
3
August, 2018
2
May, 2019
1
June, 2018
1
March, 2019
Available data
645
bam
580
bigWig
471
fastq
377
tsv
211
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
638
Homo sapiens
Biosample type
393
tissue
194
primary cell
58
cell line
Organ
681
liver
645
pancreas
592
connective tissue
442
adipose tissue
307
epithelium
243
brain
208
heart
185
vasculature
180
blood vessel
144
kidney
114
limb
102
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
42
nerve
34
embryo
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pericardium
1
pituitary gland
Project
640
AMP
5
T1D
Genome assembly (visualization)
592
hg19
578
GRCh38
Lab
620
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
49
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
organ_slims!
spleen
month_released!
May, 2021
BIOSAMPLE
ASSAY
645 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
236
30
38
1
1
body of pancreas
2
35
4
4
2
2
pancreas
1
16
2
2
1
endocrine pancreas
16
primary cell
pancreatic beta cell
10
13
12
7
pancreatic alpha cell
10
13
12
6
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
29
14
1
Panc1
13
1
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