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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
340
ChIP-seq
120
total RNA-seq
48
single cell RNA-seq
Assay category
340
DNA binding
168
Transcription
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
340
November, 2017
319
August, 2021
307
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
63
November, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
490
bam
432
bigWig
308
fastq
247
bed narrowPeak
246
bigBed narrowPeak
164
tsv
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
508
Homo sapiens
Biosample type
249
cell line
202
tissue
57
primary cell
Organ
249
liver
157
pancreas
91
brain
39
epithelium
6
vasculature
3
blood vessel
2
connective tissue
Project
508
AMP
Genome assembly (visualization)
380
hg19
378
GRCh38
Lab
508
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
20
inconsistent control read length
4
inconsistent control run_type
organ_slims!
spleen
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
508 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
cell line
HepG2
249
tissue
islet of Langerhans
120
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
astrocyte of the cerebellum
3
+ See 13 more…
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