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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ATAC-seq
204
DNase-seq
73
snATAC-seq
25
Hi-C
3
FAIRE-seq
Assay category
1653
DNA binding
1439
Transcription
659
DNA accessibility
44
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
183
June, 2019
100
May, 2020
92
February, 2023
84
August, 2021
49
February, 2021
42
May, 2022
33
October, 2019
18
May, 2021
16
July, 2019
11
May, 2023
10
April, 2020
9
March, 2020
8
January, 2021
7
November, 2018
6
August, 2017
6
November, 2019
3
January, 2018
3
October, 2017
2
November, 2020
1
December, 2018
1
March, 2023
Available data
418
bed narrowPeak
314
bam
303
bigWig
209
bigBed narrowPeak
206
bed bed3+
199
bed broadPeak
199
bigBed broadPeak
64
xls
42
fastq
21
zippedFastqFolder
16
hic
13
bedpe bed3+
12
bed bed3
12
tsv
7
bed bedgraph
4
hdf5
4
txt
1
tar
Organism
683
Homo sapiens
Biosample type
400
tissue
224
primary cell
47
in vitro differentiated cells
13
cell line
Organ
pancreas
164
kidney
131
epithelium
80
heart
63
vasculature
61
blood vessel
49
artery
48
limb
41
musculature of body
40
brain
35
connective tissue
33
liver
32
eye
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
5
vein
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
617
AMP
48
HPAP
10
LungMap
8
T1D
1
ITG
Genome assembly (visualization)
393
hg19
375
GRCh38
Lab
504
AMP-T2D consortium
82
Katalin Susztak, Upenn
48
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
ITG
Audit category:
31
inconsistent ontology term
29
audit script error
1
inconsistent replicate
organ_slims!
stomach
pancreas
BIOSAMPLE
ASSAY
684 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
Hi-C
FAIRE-seq
tissue
kidney
75
13
6
1
1
coronary artery
36
2
liver
20
2
1
heart
18
1
retina
15
3
+ See 61 more…
primary cell
Langerhans cell
48
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 8 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
2
GM12878
1
glomerular visceral epithelial cell
1
See all biosamples
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