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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
Assay category
863
DNA binding
503
Transcription
271
DNA accessibility
13
3D chromatin structure
12
DNA methylation
1
DNA sequencing
Date released
4
July, 2019
3
March, 2020
3
October, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Available data
8
hic
6
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
13
Homo sapiens
Biosample type
tissue
7
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
pancreas
4
blood vessel
4
vasculature
3
brain
3
liver
2
vein
1
connective tissue
Project
12
AMP
1
ITG
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
1
audit script error
organ_slims!
stomach
pancreas
biosample_type!
tissue
BIOSAMPLE
ASSAY
13 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
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