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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ATAC-seq
56
snATAC-seq
53
ChIP-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
Transcription
219
DNA accessibility
58
DNA methylation
53
DNA binding
10
3D chromatin structure
Target of assay
32
control
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
101
May, 2022
100
May, 2020
34
February, 2021
26
August, 2017
24
May, 2021
13
July, 2019
12
February, 2023
11
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
3
November, 2017
3
October, 2022
3
September, 2020
1
August, 2021
1
March, 2020
1
March, 2023
1
May, 2019
Available data
359
bigWig
357
bam
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
357
Homo sapiens
Biosample type
565
tissue
357
primary cell
143
cell line
124
in vitro differentiated cells
6
stem cell
Organ
137
epithelium
123
pancreas
14
vasculature
12
blood vessel
9
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
185
AMP
147
HPAP
24
T1D
1
ITG
Genome assembly (visualization)
86
hg19
23
GRCh38
Lab
182
AMP-T2D consortium
147
Klaus Kaestner, Upenn
27
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
18
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
stomach
assay_slims!
Transcription
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
357 results
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ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
pancreatic alpha cell
29
6
31
1
Langerhans cell
48
pancreatic beta cell
16
6
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
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