Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
97
total RNA-seq
72
ChIP-seq
35
single cell RNA-seq
35
snATAC-seq
17
pCHi-C
10
RRBS
9
Hi-C
6
WGBS
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
152
DNA accessibility
132
Transcription
72
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
102
May, 2020
88
February, 2023
57
May, 2021
46
February, 2021
37
September, 2020
17
August, 2017
13
July, 2019
12
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
180
fastq
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
399
Homo sapiens
Biosample type
917
tissue
399
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
101
epithelium
74
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
8
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
214
AMP
161
HPAP
24
T1D
Genome assembly (visualization)
628
hg19
GRCh38
Lab
179
AMP-T2D consortium
161
Klaus Kaestner, Upenn
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
18
inconsistent ontology term
organ_slims!
stomach
assembly!
GRCh38
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
399 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
WGBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
6
1
6
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
+ See 62 more…
See all biosamples
Download