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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
56
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
1
pCHi-C
Assay category
187
DNA accessibility
56
DNA binding
8
Transcription
Target of assay
26
histone
26
histone modification
18
transcription factor
14
narrow histone mark
12
broad histone mark
12
control
10
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
251
bam
239
bigWig
231
bed narrowPeak
231
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
34
fastq
8
tsv
1
bedpe bed3+
Organism
252
Homo sapiens
Biosample type
170
tissue
58
primary cell
23
cell line
1
in vitro differentiated cells
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
23
epithelium
19
connective tissue
18
blood
18
bodily fluid
18
ureter
7
eye
7
liver
7
pancreas
7
spleen
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
252
AMP
Genome assembly (visualization)
239
GRCh38
216
hg19
Lab
252
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
organ_slims!
stomach
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
pCHi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 19 more…
cell line
GM12878
18
HepG2
5
in vitro differentiated cells
white fat cell
1
See all biosamples
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