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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
8
ATAC-seq
2
total RNA-seq
Assay category
183
DNA binding
8
DNA accessibility
2
Transcription
Target of assay
73
histone
73
histone modification
57
transcription factor
53
control
44
broad histone mark
29
narrow histone mark
15
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
185
bam
171
fastq
133
bigWig
129
bed narrowPeak
101
bigBed narrowPeak
15
bed bed3+
14
tagAlign
4
bed broadPeak
2
tsv
Organism
193
Homo sapiens
Biosample type
145
tissue
43
in vitro differentiated cells
3
stem cell
2
primary cell
Organ
63
liver
58
pancreas
24
adipose tissue
24
connective tissue
21
epithelium
16
brain
13
embryo
1
spleen
Project
193
AMP
Genome assembly (visualization)
138
GRCh38
137
hg19
Lab
192
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
12
inconsistent control read length
organ_slims!
stomach
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
tissue
liver
38
body of pancreas
33
4
endocrine pancreas
16
brain
15
omental fat pad
11
1
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic acinar cell
2
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