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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1519
ChIP-seq
1058
total RNA-seq
332
ATAC-seq
196
single cell RNA-seq
174
DNase-seq
87
RNA microarray
73
snATAC-seq
52
pCHi-C
22
Hi-C
17
RRBS
16
WGBS
15
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA methylation
Date released
11
July, 2019
6
August, 2017
Available data
15
bed bedMethyl
15
bigBed bedMethyl
4
fastq
Organism
17
Homo sapiens
Biosample type
9
primary cell
8
tissue
Organ
6
epithelium
5
musculature of body
4
kidney
2
brain
heart
2
liver
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
stomach
pancreas
heart
BIOSAMPLE
ASSAY
17 results
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RRBS
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 4 more…
tissue
skeletal muscle tissue
4
brain
1
kidney
1
liver
1
pericardium
1
See all biosamples
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