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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
total RNA-seq
203
ChIP-seq
133
ATAC-seq
75
single cell RNA-seq
51
WGBS
11
snATAC-seq
8
DNase-seq
8
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
75
Transcription
Date released
39
April, 2018
32
July, 2018
3
August, 2018
1
June, 2018
Available data
75
bam
75
bigWig
75
tsv
70
fastq
Organism
75
Homo sapiens
Biosample type
69
primary cell
6
tissue
Organ
93
heart
75
pancreas
69
epithelium
64
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
75
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
75
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
thymus
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
75 results
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single cell RNA-seq
primary cell
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
pancreatic ductal cell
10
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tissue
islet of Langerhans
6
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