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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
4
Hi-C
Assay category
228
Transcription
105
DNA accessibility
84
DNA binding
47
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
151
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
1
March, 2023
Available data
169
fastq
153
zippedFastqFolder
145
bigWig
135
bam
84
bed narrowPeak
84
tagAlign
57
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
484
Homo sapiens
Biosample type
484
primary cell
96
tissue
11
cell line
2
stem cell
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
324
HPAP
159
T1D
1
ITG
Genome assembly (visualization)
146
GRCh38
138
hg19
Lab
324
Klaus Kaestner, Upenn
159
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
1
inconsistent ontology term
organ_slims!
thymus
award.project!
AMP
month_released!
May, 2020
BIOSAMPLE
ASSAY
484 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
51
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
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