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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
22
ChIP-seq
16
total RNA-seq
4
MeRIP-seq
3
snATAC-seq
2
Hi-C
1
DNase-seq
1
RRBS
Assay category
41
DNA accessibility
22
DNA binding
16
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
6
transcription factor
4
control
2
nucleotide modification
1
RNA binding protein
Date released
19
August, 2017
19
November, 2019
18
February, 2023
6
April, 2018
6
March, 2020
5
March, 2019
4
November, 2020
2
August, 2021
2
July, 2018
2
September, 2017
1
January, 2021
1
July, 2019
1
October, 2017
Available data
51
bam
32
bigWig
31
bed narrowPeak
31
fastq
20
bed bed3+
10
tsv
2
bed broadPeak
1
bed bedMethyl
1
bedpe
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed narrowPeak
1
hic
Organism
86
Homo sapiens
Biosample type
86
tissue
Organ
86
pancreas
Project
63
AMP
23
T1D
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
55
AMP-T2D consortium
19
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
organ_slims!
thymus
replication_type!
unreplicated
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
DNase-seq
RRBS
tissue
islet of Langerhans
37
22
16
4
3
2
1
1
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