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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
158
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
1673
DNA binding
775
DNA accessibility
365
Transcription
91
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
86
February, 2023
60
May, 2022
57
August, 2021
56
September, 2020
47
September, 2023
14
October, 2019
13
February, 2021
9
April, 2020
4
July, 2018
4
March, 2023
4
May, 2021
4
May, 2023
2
March, 2020
2
May, 2020
1
December, 2019
1
November, 2018
1
September, 2018
Available data
tsv
1279
bam
1275
bigWig
356
fastq
72
txt
52
zippedFastqFolder
8
csv
2
bed bed3+
Organism
361
Homo sapiens
Biosample type
184
primary cell
177
tissue
in vitro differentiated cells
2
cell line
2
stem cell
Organ
108
kidney
71
pancreas
53
epithelium
21
liver
14
eye
9
lung
4
bone element
4
skeleton
1
adipose tissue
1
connective tissue
1
heart
1
musculature of body
Project
177
HPAP
121
AMP
47
KPMP
9
LungMap
7
T1D
4
community
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
177
Klaus Kaestner, Upenn
60
Katalin Susztak, Upenn
47
KPMP
34
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
organ_slims!
thymus
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
BIOSAMPLE
ASSAY
365 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
2
+ See 4 more…
tissue
kidney
49
59
islet of Langerhans
31
liver
20
1
lung
9
acetabular part of hip bone
1
+ See 7 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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