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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
total RNA-seq
80
ATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
85
Transcription
80
DNA accessibility
Date released
689
February, 2021
406
November, 2017
343
August, 2017
306
October, 2019
296
May, 2020
277
August, 2021
218
June, 2019
176
May, 2022
168
July, 2018
166
February, 2023
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
79
May, 2021
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
55
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
76
fastq
63
bed narrowPeak
16
tsv
5
bed bed3
4
txt
Organism
165
Homo sapiens
Biosample type
88
primary cell
77
tissue
in vitro differentiated cells
1
cell line
Organ
52
epithelium
38
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
90
AMP
76
HPAP
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
90
AMP-T2D consortium
76
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
thymus
biosample_type!
in vitro differentiated cells
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
tissue
coronary artery
35
retina
2
15
pigmented layer of retina
2
12
acetabular part of hip bone
1
1
ilium
1
1
+ See 5 more…
cell line
EndoC_BH1
1
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