Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
7
total RNA-seq
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
7
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
8
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
127
Homo sapiens
Biosample type
127
tissue
primary cell
Organ
774
liver
568
pancreas
265
brain
251
kidney
221
heart
193
connective tissue
127
blood vessel
127
vasculature
116
limb
103
adipose tissue
92
epithelium
81
musculature of body
71
artery
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
18
ureter
11
lung
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
127
AMP-T2D consortium
organ_slims!
thymus
biosample_type!
primary cell
month_released!
February, 2021
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
127 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
ascending aorta
16
2
1
thoracic aorta
16
1
2
aorta
13
1
2
1
1
Download