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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
456
total RNA-seq
152
ChIP-seq
52
ATAC-seq
8
WGBS
7
DNase-seq
6
single cell RNA-seq
3
pCHi-C
2
small RNA-seq
1
Hi-C
1
RNA microarray
Assay category
464
Transcription
152
DNA binding
59
DNA accessibility
8
DNA methylation
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
56
broad histone mark
42
control
30
narrow histone mark
24
transcription factor
8
RNA binding protein
Date released
452
February, 2021
57
August, 2017
50
May, 2019
36
February, 2023
27
October, 2019
23
October, 2018
17
July, 2019
7
August, 2021
5
February, 2020
4
June, 2019
4
March, 2020
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
593
bam
549
bigWig
465
tsv
125
bed narrowPeak
72
bigBed narrowPeak
44
fastq
14
tagAlign
11
bed bed3+
8
bed broadPeak
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
1
hic
Organism
687
Homo sapiens
Biosample type
621
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
688
AMP
Genome assembly (visualization)
591
GRCh38
558
hg19
Lab
688
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
thymus
biosample_type!
primary cell
BIOSAMPLE
ASSAY
688 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
coronary artery
1
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
aorta
1
13
2
4
1
1
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cell line
smooth muscle cell of the coronary artery
52
6
8
in vitro differentiated cells
white fat cell
1
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