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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
116
ChIP-seq
113
total RNA-seq
74
DNase-seq
70
single cell RNA-seq
6
snATAC-seq
3
pCHi-C
3
snDrop-seq
2
Hi-C
2
RNA microarray
2
STARR-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
small RNA-seq
Assay category
202
DNA accessibility
184
Transcription
116
DNA binding
3
DNA methylation
2
3D chromatin structure
Target of assay
74
histone
74
histone modification
46
broad histone mark
28
narrow histone mark
27
control
15
transcription factor
7
recombinant protein
4
RNA binding protein
Date released
136
August, 2021
74
February, 2021
71
June, 2019
50
May, 2019
47
September, 2023
45
October, 2019
35
February, 2023
23
April, 2019
14
May, 2023
11
July, 2019
5
March, 2020
3
December, 2019
3
February, 2020
Available data
273
bed narrowPeak
266
bam
229
bigWig
150
bigBed narrowPeak
84
tsv
73
bed bed3+
73
bed broadPeak
73
bigBed broadPeak
64
xls
62
txt
6
tagAlign
5
csv
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
Organism
517
Homo sapiens
Biosample type
432
tissue
85
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
470
AMP
47
KPMP
Genome assembly (visualization)
346
GRCh38
238
hg19
Lab
326
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
organ_slims!
thymus
biosample_type!
primary cell
BIOSAMPLE
ASSAY
517 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
snDrop-seq
Hi-C
RNA microarray
STARR-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
tissue
kidney
75
27
49
13
64
6
1
1
1
coronary artery
36
5
1
2
tibial artery
1
23
1
2
aorta
13
1
4
1
1
2
ascending aorta
16
2
1
+ See 16 more…
cell line
smooth muscle cell of the coronary artery
8
6
52
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
+ See 2 more…
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