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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
46
ATAC-seq
25
ChIP-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
51
DNA accessibility
25
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
35
February, 2023
14
May, 2019
8
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
99
bam
72
bigWig
66
tsv
58
bed narrowPeak
8
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
145
Homo sapiens
Biosample type
79
tissue
66
cell line
primary cell
Organ
678
liver
575
connective tissue
507
pancreas
457
adipose tissue
298
kidney
285
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
91
epithelium
81
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
2
intestine
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
145
AMP
Genome assembly (visualization)
115
GRCh38
80
hg19
Lab
145
AMP-T2D consortium
organ_slims!
thymus
biosample_type!
primary cell
target.investigated_as!
histone
BIOSAMPLE
ASSAY
145 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
3
2
aorta
1
2
4
2
1
1
tibial artery
1
1
5
2
thoracic aorta
2
1
5
ascending aorta
2
4
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
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