Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
31
DNA accessibility
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
121
May, 2021
55
August, 2017
55
June, 2019
32
September, 2018
28
October, 2019
9
November, 2017
5
May, 2019
4
August, 2021
1
November, 2020
Available data
276
bigWig
271
bam
255
bed narrowPeak
100
tagAlign
95
fastq
86
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
30
bed bed3+
Organism
310
Homo sapiens
Biosample type
1085
tissue
486
cell line
310
primary cell
199
in vitro differentiated cells
3
stem cell
Organ
110
epithelium
70
pancreas
29
vasculature
27
kidney
24
blood vessel
19
vein
18
connective tissue
14
brain
11
musculature of body
8
heart
6
liver
4
eye
Project
226
AMP
84
T1D
Genome assembly (visualization)
269
hg19
234
GRCh38
Lab
193
AMP-T2D consortium
117
Kyle Gaulton, UCSD
Audit category:
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
thymus
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
2
skeletal muscle myoblast
15
2
+ See 29 more…
See all biosamples
Download