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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
4
total RNA-seq
3
DNase-seq
1
RRBS
Assay category
4
DNA binding
4
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
RNA binding protein
1
transcription factor
Date released
7
June, 2019
5
July, 2019
Available data
11
bam
9
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
4
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
12
Homo sapiens
Biosample type
303
tissue
66
cell line
12
primary cell
1
in vitro differentiated cells
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
12
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
12
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
thymus
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
12 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
cardiac fibroblast
4
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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