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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
37
ChIP-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
1
DNAme array
Assay category
174
DNA accessibility
87
Transcription
58
DNA methylation
37
DNA binding
10
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
134
May, 2022
55
May, 2020
54
May, 2021
45
February, 2021
43
September, 2020
13
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
461
bigWig
bam
295
bed narrowPeak
289
fastq
153
zippedFastqFolder
120
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
382
Homo sapiens
Biosample type
738
tissue
382
primary cell
94
in vitro differentiated cells
71
cell line
7
stem cell
Organ
111
epithelium
99
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
232
HPAP
125
AMP
24
T1D
1
ITG
Genome assembly (visualization)
52
hg19
11
GRCh38
Lab
232
Klaus Kaestner, Upenn
92
AMP-T2D consortium
57
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
organ_slims!
thymus
files.file_type!
bam
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
382 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
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