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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
2
RRBS
2
WGBS
1
GRO-seq
Assay category
96
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
5
March, 2020
4
July, 2019
3
February, 2020
1
April, 2019
1
January, 2018
1
October, 2019
Available data
253
bigWig
bam
205
bed narrowPeak
182
tsv
94
bigBed narrowPeak
33
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
27
fastq
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
183
Homo sapiens
Biosample type
181
tissue
1
in vitro differentiated cells
1
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
183
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
1
hg18
Lab
143
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
organ_slims!
thymus
files.file_type!
bam
BIOSAMPLE
ASSAY
183 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
RRBS
WGBS
GRO-seq
tissue
left cardiac atrium
18
40
coronary artery
35
1
heart left ventricle
18
1
1
1
1
2
heart right ventricle
17
1
1
right cardiac atrium
18
1
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in vitro differentiated cells
pancreatic endoderm
1
primary cell
cardiac fibroblast
1
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