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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
42
total RNA-seq
22
ATAC-seq
7
Hi-C
5
pCHi-C
4
RRBS
4
WGBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
43
Transcription
23
DNA accessibility
8
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Target of assay
44
histone
44
histone modification
22
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
1
RNA binding protein
Date released
40
May, 2022
31
August, 2021
28
August, 2017
14
November, 2017
13
February, 2020
8
July, 2019
7
October, 2017
4
March, 2020
3
October, 2019
2
February, 2021
1
December, 2018
1
February, 2023
1
May, 2020
Available data
bam
844
bigWig
644
bed narrowPeak
486
fastq
485
bigBed narrowPeak
204
tagAlign
200
tsv
110
bed broadPeak
101
bigBed broadPeak
48
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
4
hdf5
3
tar
2
bed bed3
2
bedpe bed3+
2
hic
1
csv
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
112
tissue
35
cell line
6
primary cell
Organ
257
pancreas
210
kidney
207
epithelium
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
153
AMP
Genome assembly (visualization)
49
hg19
2
GRCh38
Lab
82
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
organ_slims!
thymus
files.file_type!
bam
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
RRBS
WGBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
23
20
20
1
1
1
3
1
brain
7
1
1
cingulate gyrus
6
layer of hippocampus
3
right lobe of liver
1
1
1
+ See 17 more…
cell line
HepG2
19
9
2
2
2
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
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