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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
287
DNA accessibility
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
406
bam
383
bigWig
336
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
tar
Organism
850
Homo sapiens
Biosample type
2148
tissue
850
primary cell
621
cell line
282
in vitro differentiated cells
8
stem cell
Organ
339
epithelium
288
pancreas
31
connective tissue
26
kidney
19
vasculature
18
brain
14
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
6
musculature of body
6
vein
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
405
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
397
hg19
338
GRCh38
Lab
400
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
organ_slims!
thymus
files.file_type!
tar
target.investigated_as!
histone
BIOSAMPLE
ASSAY
850 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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