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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
87
ATAC-seq
Assay category
106
DNA binding
87
DNA accessibility
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
65
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
20
May, 2022
16
August, 2021
1
April, 2019
1
November, 2017
Available data
bam
3169
bigWig
1753
bed narrowPeak
1599
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
153
zippedFastqFolder
104
txt
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
193
Homo sapiens
Biosample type
145
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
76
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
193
AMP
Genome assembly (visualization)
118
hg19
75
GRCh38
Lab
85
AMP-T2D consortium
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
organ_slims!
thymus
lab.title!
Katalin Susztak, Upenn
files.file_type!
bam
BIOSAMPLE
ASSAY
193 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
left cardiac atrium
40
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
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