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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
1
ATAC-seq
Assay category
207
DNA accessibility
DNA binding
Date released
187
June, 2019
9
November, 2018
7
October, 2019
2
August, 2017
1
March, 2019
1
November, 2020
October, 2017
Available data
1807
bam
1771
bigWig
1599
tsv
493
fastq
486
bed narrowPeak
241
bigBed narrowPeak
220
bed bed3+
207
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tar
1
vcf
Organism
207
Homo sapiens
Biosample type
177
tissue
28
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
207
AMP
Genome assembly (visualization)
205
GRCh38
183
hg19
Lab
206
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
organ_slims!
thymus
month_released!
October, 2017
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
207 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
+ See 18 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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