Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
493
total RNA-seq
180
DNase-seq
84
RNA microarray
33
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
511
Transcription
221
DNA accessibility
33
DNA binding
6
DNA methylation
Target of assay
19
histone
19
histone modification
11
narrow histone mark
9
control
8
broad histone mark
5
transcription factor
4
RNA binding protein
Date released
649
February, 2021
411
August, 2017
400
November, 2017
398
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
59
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
717
bam
698
bigWig
507
tsv
214
bed narrowPeak
203
bigBed narrowPeak
182
bed bed3+
180
bed broadPeak
180
bigBed broadPeak
89
txt
45
fastq
6
csv
4
bed bedgraph
2
bed bed3
2
tagAlign
Organism
860
Homo sapiens
Biosample type
705
tissue
99
primary cell
30
cell line
26
in vitro differentiated cells
Organ
473
connective tissue
387
adipose tissue
150
bone element
101
heart
89
kidney
vasculature
71
blood vessel
68
artery
52
epithelium
43
musculature of body
38
limb
36
pancreas
30
brain
18
ureter
8
skeleton
7
eye
5
liver
Project
815
AMP
45
HPAP
Genome assembly (visualization)
707
GRCh38
691
hg19
Lab
815
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
153
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
thymus
vasculature
BIOSAMPLE
ASSAY
860 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
RNA microarray
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
heart
18
kidney
13
5
+ See 49 more…
primary cell
Langerhans cell
27
12
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
pancreatic alpha cell
6
+ See 16 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download