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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
pCHi-C
15
total RNA-seq
11
Hi-C
8
ATAC-seq
3
ChIP-seq
Assay category
15
Transcription
11
3D chromatin structure
8
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
707
February, 2021
411
August, 2017
406
November, 2017
398
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
42
tsv
20
bigWig
17
bam
12
bedpe bed3+
11
hic
3
bed narrowPeak
2
ibed
1
bed broadPeak
1
bedpe
1
fastq
Organism
66
Homo sapiens
Biosample type
44
tissue
9
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
19
pancreas
7
heart
6
epithelium
5
musculature of body
4
blood vessel
4
vasculature
3
liver
2
brain
2
connective tissue
2
intestine
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
thymus
1
urinary bladder
1
vein
Project
59
AMP
7
T1D
Genome assembly (visualization)
35
hg19
18
GRCh38
Lab
61
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
15
inconsistent ontology term
organ_slims!
thymus
kidney
BIOSAMPLE
ASSAY
66 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
1
6
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 15 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
MCF-7
1
fibroblast cell line
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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