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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
31
pCHi-C
15
total RNA-seq
14
Hi-C
4
ATAC-seq
1
MPRA
Assay category
37
DNA binding
15
Transcription
14
3D chromatin structure
4
DNA accessibility
Target of assay
28
transcription factor
4
control
3
histone
3
histone modification
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
398
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
50
bam
50
bigWig
44
tsv
35
fastq
33
bed narrowPeak
30
bigBed narrowPeak
15
bedpe bed3+
13
hic
3
cool
2
ibed
1
txt
Organism
101
Homo sapiens
Biosample type
46
tissue
40
cell line
8
in vitro differentiated cells
4
primary cell
4
stem cell
Organ
27
blood
27
bodily fluid
17
pancreas
9
epithelium
8
spleen
7
heart
5
musculature of body
4
blood vessel
4
liver
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
stomach
thymus
1
urinary bladder
1
vein
Project
92
AMP
7
T1D
3
HPAP
Genome assembly (visualization)
65
hg19
46
GRCh38
Lab
99
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
3
audit script error
1
inconsistent control
organ_slims!
thymus
BIOSAMPLE
ASSAY
102 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
MPRA
tissue
spleen
7
1
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 15 more…
cell line
GM12878
27
EndoC_BH1
1
2
2
early embryonic cell
2
HepG2
1
MCF-7
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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