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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
50
ChIP-seq
3
single cell RNA-seq
2
RNA microarray
1
pCHi-C
Assay category
198
Transcription
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
666
February, 2021
406
November, 2017
400
August, 2017
364
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
59
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
243
bam
220
bigWig
198
tsv
50
tagAlign
27
bed narrowPeak
Organism
251
Homo sapiens
Biosample type
196
tissue
52
primary cell
2
in vitro differentiated cells
1
cell line
Organ
199
liver
6
epithelium
3
kidney
Project
206
AMP
45
T1D
Genome assembly (visualization)
220
hg19
212
GRCh38
Lab
206
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
4
audit script error
organ_slims!
thymus
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
251 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
pCHi-C
tissue
liver
143
50
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
hepatocyte
5
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
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