Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
DNase-seq
3
Hi-C
1
snATAC-seq
Assay category
66
DNA accessibility
3
3D chromatin structure
Date released
63
June, 2019
3
July, 2019
2
November, 2018
1
May, 2022
Available data
300
bam
290
bigWig
263
bed narrowPeak
174
bigBed narrowPeak
133
tagAlign
93
bed broadPeak
71
bigBed broadPeak
69
bed bed3+
35
tsv
23
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
69
Homo sapiens
Biosample type
60
tissue
9
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
69
AMP
Genome assembly (visualization)
65
GRCh38
59
hg19
Lab
69
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
thymus
BIOSAMPLE
ASSAY
69 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
snATAC-seq
tissue
muscle of arm
17
brain
14
muscle of leg
13
frontal cortex
2
Ammon's horn
1
+ See 13 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
choroid plexus epithelial cell
1
+ See 1 more…
See all biosamples
Download