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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
211
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
183
histone
183
histone modification
116
narrow histone mark
67
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
12
October, 2017
2
March, 2020
2
November, 2018
1
February, 2023
Available data
237
bam
216
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
114
tagAlign
42
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
14
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
279
Homo sapiens
Biosample type
261
tissue
18
primary cell
Organ
879
pancreas
644
connective tissue
494
epithelium
474
adipose tissue
452
liver
376
heart
344
kidney
279
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
33
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
279
AMP
Genome assembly (visualization)
211
GRCh38
158
hg19
Lab
279
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
organ_slims!
thymus
target.investigated_as!
transcription factor
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
279 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
16
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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