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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
Assay category
22
DNA binding
Target of assay
968
histone modification
967
histone
514
transcription factor
499
narrow histone mark
467
broad histone mark
326
control
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
9
November, 2017
5
November, 2018
2
August, 2017
2
December, 2017
2
December, 2018
2
January, 2019
Available data
22
bam
22
bed narrowPeak
22
bigWig
22
fastq
20
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
Organism
22
Homo sapiens
Biosample type
18
cell line
2
in vitro differentiated cells
2
tissue
Organ
15
liver
5
blood
5
bodily fluid
2
connective tissue
Project
22
AMP
Genome assembly (visualization)
22
hg19
21
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
4
missing controlled_by
Audit category:
8
inconsistent control read length
5
inconsistent control run_type
organ_slims!
thymus
limb
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
cell line
HepG2
13
GM12878
5
in vitro differentiated cells
adipocyte
2
tissue
liver
2
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