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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
318
November, 2017
314
May, 2020
294
August, 2021
260
February, 2021
256
May, 2021
200
May, 2022
191
February, 2023
189
June, 2019
166
July, 2018
157
August, 2017
115
October, 2019
90
July, 2019
87
November, 2018
63
December, 2017
59
September, 2020
58
March, 2020
50
November, 2019
47
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
85
bed narrowPeak
64
xls
57
txt
33
bam
26
bigWig
8
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
294
Homo sapiens
Biosample type
228
tissue
41
cell line
24
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
29
liver
8
embryo
6
blood vessel
6
vasculature
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
294
AMP
Genome assembly (visualization)
89
GRCh38
38
hg19
Lab
133
AMP-T2D consortium
128
Katalin Susztak, Upenn
33
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
thymus
connective tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
294 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
15
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
primary cell
hepatocyte
1
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