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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
978
total RNA-seq
279
ChIP-seq
260
ATAC-seq
178
DNase-seq
161
single cell RNA-seq
27
WGBS
27
snATAC-seq
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1155
Transcription
469
DNA accessibility
279
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
172
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
91
February, 2023
77
July, 2019
74
October, 2019
59
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
November, 2019
39
May, 2021
37
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1441
bam
1250
bigWig
1075
tsv
464
bed narrowPeak
303
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1987
Homo sapiens
Biosample type
1990
tissue
851
primary cell
623
cell line
279
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
426
pancreas
291
liver
218
heart
217
kidney
81
brain
79
blood vessel
79
vasculature
73
limb
70
bone element
56
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1896
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
1365
GRCh38
1316
hg19
Lab
1737
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
45
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
18
missing controlled_by
organ_slims!
thymus
target.investigated_as!
histone modification
files.file_type!
txt
BIOSAMPLE
ASSAY
1990 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
292
20
68
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
80
20
2
1
3
1
1
1
1
kidney
7
75
13
51
6
1
1
1
bone tissue
58
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