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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
52
ChIP-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
52
DNA binding
14
DNA methylation
5
DNA accessibility
Target of assay
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
November, 2019
39
May, 2021
37
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
135
fastq
130
bam
118
bigWig
89
tsv
14
bed bed3+
9
bed narrowPeak
8
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
4
bigBed narrowPeak
Organism
159
Homo sapiens
Biosample type
160
tissue
31
in vitro differentiated cells
21
primary cell
Organ
107
pancreas
25
adipose tissue
25
connective tissue
21
liver
7
musculature of body
Project
160
AMP
Genome assembly (visualization)
120
hg19
118
GRCh38
Lab
160
AMP-T2D consortium
Audit category:
18
missing controlled_by
organ_slims!
thymus
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
160 results
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total RNA-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
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