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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
ChIP-seq
11
single cell RNA-seq
10
snATAC-seq
4
DNase-seq
1
pCHi-C
Assay category
67
Transcription
59
DNA accessibility
Date released
60
February, 2021
35
February, 2023
19
April, 2020
3
July, 2019
3
October, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
68
bam
60
bigWig
59
tsv
49
bed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
Organism
126
Homo sapiens
Biosample type
65
tissue
60
cell line
2
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
108
AMP
19
LungMap
Genome assembly (visualization)
103
GRCh38
68
hg19
Lab
108
AMP-T2D consortium
19
Xin Sun, UCSD
organ_slims!
ureter
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
tissue
coronary artery
1
36
2
lung
9
10
1
tibial artery
1
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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