Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
492
ATAC-seq
317
single cell RNA-seq
194
DNase-seq
87
RNA microarray
63
snATAC-seq
57
pCHi-C
34
Hi-C
34
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
34
DNA methylation
Date released
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
4
August, 2021
Available data
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
2
bed bed3+
Organism
38
Homo sapiens
Biosample type
27
tissue
6
primary cell
3
cell line
2
in vitro differentiated cells
Organ
12
pancreas
8
connective tissue
8
epithelium
8
heart
6
adipose tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
32
AMP
6
HPAP
Genome assembly (visualization)
17
GRCh38
2
hg19
Lab
30
AMP-T2D consortium
6
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
organ_slims!
ureter
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
38 results
search-icon
table-tab-icon
Clear Filters
WGBS
Capture-C
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
primary cell
pancreatic alpha cell
6
cell line
EndoC_BH1
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
Download