Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
19
ATAC-seq
19
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
40
Transcription
19
DNA accessibility
19
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
7
control
6
broad histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
23
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
4
December, 2017
2
August, 2021
Available data
60
bam
57
bigWig
41
tsv
16
bed narrowPeak
9
fastq
1
bedpe bed3+
1
hic
Organism
87
Homo sapiens
Biosample type
76
cell line
6
in vitro differentiated cells
5
primary cell
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
83
AMP
4
T1D
Genome assembly (visualization)
59
hg19
56
GRCh38
Lab
81
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
87
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
ureter
BIOSAMPLE
ASSAY
87 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
33
19
15
6
2
1
in vitro differentiated cells
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
Download