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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
27
ChIP-seq
13
DNase-seq
6
snATAC-seq
1
Hi-C
Assay category
113
Transcription
94
DNA accessibility
27
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
June, 2019
5
February, 2021
4
October, 2019
July, 2019
1
December, 2019
Available data
97
bed narrowPeak
64
xls
62
txt
40
bam
33
bigWig
31
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
5
csv
5
tsv
1
hic
Organism
235
Homo sapiens
Biosample type
235
tissue
Organ
235
kidney
Project
188
AMP
47
KPMP
Genome assembly (visualization)
108
GRCh38
34
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
46
AMP-T2D consortium
Audit category:
5
audit script error
organ_slims!
ureter
month_released!
July, 2019
BIOSAMPLE
ASSAY
235 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
Hi-C
tissue
kidney
75
64
49
27
13
6
1
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