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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
5
total RNA-seq
3
DNase-seq
1
RRBS
Assay category
5
DNA binding
5
Transcription
3
DNA accessibility
1
DNA methylation
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
8
June, 2019
5
July, 2019
1
May, 2021
Available data
13
bam
11
bigWig
6
bed narrowPeak
6
bigBed narrowPeak
5
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
14
Homo sapiens
Biosample type
313
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
430
epithelium
349
pancreas
136
connective tissue
37
vasculature
36
kidney
31
blood vessel
29
embryo
29
liver
22
vein
21
brain
14
heart
14
musculature of body
8
blood
8
bodily fluid
5
eye
3
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
14
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
14
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
ureter
BIOSAMPLE
ASSAY
14 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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