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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
69
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
69
DNA binding
6
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
13
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
53
August, 2017
23
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
November, 2019
1
October, 2017
1
October, 2019
Available data
47
bam
44
fastq
30
bigWig
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
bed bed3+
4
tsv
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
86
Homo sapiens
Biosample type
85
tissue
1
in vitro differentiated cells
1
primary cell
Organ
589
liver
520
pancreas
372
epithelium
291
heart
234
brain
216
kidney
183
connective tissue
162
vasculature
158
blood vessel
97
bone element
87
adipose tissue
81
artery
79
limb
69
blood
69
bodily fluid
56
musculature of body
38
eye
36
nerve
24
spleen
20
embryo
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
8
missing controlled_by
organ_slims!
ureter
files.file_type!
bed bed3+
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
1
omental fat pad
11
1
1
adipose tissue
2
3
3
1
white adipose tissue
8
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
See all biosamples
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